University of Wisconsin–Madisonmandellab.org
MANDEL LABPapers extraction
Mandel Lab · Vibrio–squid symbiosis

papers extraction

Gene-level data from the Vibrio fischeri literature. Add papers to the database, fix what is missing, and browse what was extracted from them.

In the database

View data
—PapersSearchable in View data
—Gene records indexedLatest extraction run per paper
—Unique genesMatched to a locus tag
—Last extractionNewest extracted gene record

Needs attention

—RecommendedNew papers from PubMed to screen—ErrorsPapers missing main PDF—WarningsPapers need review of supplementary materials
— openLab password requiredAdd PaperSearch PubMed or add by PMID, screen, attach files, and send them to extraction. Lab members sign in with the lab password and their name.Open to everyoneView dataBrowse papers and genes. Same data the API serves.